In [6]: %load http://matplotlib.org/plot_directive/mpl_examples/mplot3d/contour3d_demo.py
In [7]: from mpl_toolkits.mplot3d import axes3d
...: import matplotlib.pyplot as plt
...: fig = plt.figure()
...: ax = fig.add_subplot(111, projection='3d')
...: X, Y, Z = axes3d.get_test_data(0.05)
...: cset = ax.contour(X, Y, Z)
...: ax.clabel(cset, fontsize=9, inline=1)
...: plt.show()
The %load
magic can also load source code from objects in the user or
global namespace by invoking the -n
option.
In [1]: import hello_world
...: %load -n hello_world.say_hello
In [3]: def say_hello() :
...: print("Hello World!")
Inline Matplotlib
One of the most exciting features of the QtConsole is embedded matplotlib
figures. You can use any standard matplotlib GUI backend
to draw the figures, and since there is now a two-process model, there is no
longer a conflict between user input and the drawing eventloop.
display()
IPython provides a function display()
for displaying rich representations
of objects if they are available. The IPython display
system provides a mechanism for specifying PNG or SVG (and more)
representations of objects for GUI frontends.
When you enable matplotlib integration via the %matplotlib
magic, IPython registers
convenient PNG and SVG renderers for matplotlib figures, so you can embed them
in your document by calling display()
on one or more of them. This is
especially useful for saving your work.
In [4]: from IPython.display import display
In [5]: plt.plot(range(5)) # plots in the matplotlib window
In [6]: display(plt.gcf()) # embeds the current figure in the qtconsole
In [7]: display(*getfigs()) # embeds all active figures in the qtconsole
If you have a reference to a matplotlib figure object, you can always display
that specific figure:
In [1]: f = plt.figure()
In [2]: plt.plot(np.rand(100))
Out[2]: [<matplotlib.lines.Line2D at 0x7fc6ac03dd90>]
In [3]: display(f)
# Plot is shown here
In [4]: plt.title('A title')
Out[4]: <matplotlib.text.Text at 0x7fc6ac023450>
In [5]: display(f)
# Updated plot with title is shown here.
--matplotlib inline
If you want to have all of your figures embedded in your session, instead of
calling display()
, you can specify --matplotlib inline
when you start the
console, and each time you make a plot, it will show up in your document, as if
you had called display(fig)()
.
The inline backend can use either SVG or PNG figures (PNG being the default).
It also supports the special key 'retina'
, which is 2x PNG for high-DPI displays.
To switch between them, set the InlineBackend.figure_format
configurable
in a config file, or via the %config
magic:
In [10]: %config InlineBackend.figure_format = 'svg'
Changing the inline figure format also affects calls to display()
above,
even if you are not using the inline backend for all figures.
By default, IPython closes all figures at the completion of each execution. This means you
don’t have to manually close figures, which is less convenient when figures aren’t attached
to windows with an obvious close button. It also means that the first matplotlib call in
each cell will always create a new figure:
In [11]: plt.plot(range(100))
<single-line plot>
In [12]: plt.plot([1,3,2])
<another single-line plot>
However, it does prevent the list of active figures surviving from one input cell to the
next, so if you want to continue working with a figure, you must hold on to a reference to
In [11]: fig = gcf()
....: fig.plot(rand(100))
In [12]: fig.title('Random Title')
<redraw plot with title>
This behavior is controlled by the InlineBackend.close_figures
configurable, and
if you set it to False, via %config or config file, then IPython will not close figures,
and tools like gcf()
, gca()
, getfigs()
will behave the same as they
do with other backends. You will, however, have to manually close figures:
# close all active figures:
In [13]: [ fig.close() for fig in getfigs() ]
Saving and Printing
IPythonQt has the ability to save your current session, as either HTML or
XHTML. If you have been using display()
or inline matplotlib, your figures
will be PNG in HTML, or inlined as SVG in XHTML. PNG images have the option to
be either in an external folder, as in many browsers’ “Webpage, Complete”
option, or inlined as well, for a larger, but more portable file.
Export to SVG+XHTML requires that you are using SVG figures, which is not
the default. To switch the inline figure format to use SVG during an active
session, do:
In [10]: %config InlineBackend.figure_format = 'svg'
Or, you can add the same line (c.Inline... instead of %config Inline...) to
your config files.
This will only affect figures plotted after making this call
The widget also exposes the ability to print directly, via the default print
shortcut or context menu.
Saving is only available to richtext Qt widgets, which are used by default,
but if you pass the --plain
flag, saving will not be available to you.
See these examples of png/html
and
svg/xhtml
output. Note that syntax highlighting
does not survive export. This is a known issue, and is being investigated.
Colors and Highlighting
Terminal IPython has always had some coloring, but never syntax
highlighting. There are a few simple color choices, specified by the colors
flag or %colors
magic:
LightBG for light backgrounds
Linux for dark backgrounds
NoColor for a simple colorless terminal
The Qt widget has full support for the colors
flag used in the terminal shell.
The Qt widget, however, has full syntax highlighting as you type, handled by
the pygments library. The style
argument exposes access to any style by
name that can be found by pygments, and there are several already
installed. The colors
argument, if unspecified, will be guessed based on
the chosen style. Similarly, there are default styles associated with each
colors
option.
Screenshot of ipython qtconsole --colors=linux
, which uses the ‘monokai’
theme by default:
Calling ipython qtconsole -h
will show all the style names that
pygments can find on your system.
You can also pass the filename of a custom CSS stylesheet, if you want to do
your own coloring, via the stylesheet
argument. The default LightBG
stylesheet:
QPlainTextEdit, QTextEdit { background-color: white;
color: black ;
selection-background-color: #ccc}
.error { color: red; }
.in-prompt { color: navy; }
.in-prompt-number { font-weight: bold; }
.out-prompt { color: darkred; }
.out-prompt-number { font-weight: bold; }
/* .inverted is used to highlight selected completion */
.inverted { background-color: black ; color: white; }
Fonts
The QtConsole has configurable via the ConsoleWidget. To change these, set the
font_family
or font_size
traits of the ConsoleWidget. For instance, to
use 9pt Anonymous Pro:
$> ipython qtconsole --ConsoleWidget.font_family="Anonymous Pro" --ConsoleWidget.font_size=9
Process Management
With the two-process ZMQ model, the frontend does not block input during
execution. This means that actions can be taken by the frontend while the
Kernel is executing, or even after it crashes. The most basic such command is
via ‘Ctrl-.’, which restarts the kernel. This can be done in the middle of a
blocking execution. The frontend can also know, via a heartbeat mechanism, that
the kernel has died. This means that the frontend can safely restart the
kernel.
Multiple Consoles
Since the Kernel listens on the network, multiple frontends can connect to it.
These do not have to all be qt frontends - any IPython frontend can connect and
run code. When you start ipython qtconsole, there will be an output line,
like:
[IPKernelApp] To connect another client to this kernel, use:
[IPKernelApp] --existing kernel-12345.json
Other frontends can connect to your kernel, and share in the execution. This is
great for collaboration. The --existing
flag means connect to a kernel
that already exists. Starting other consoles
with that flag will not try to start their own kernel, but rather connect to
yours. kernel-12345.json
is a small JSON file with the ip, port, and
authentication information necessary to connect to your kernel. By default, this file
will be in your default profile’s security directory. If it is somewhere else,
the output line will print the full path of the connection file, rather than
just its filename.
If you need to find the connection info to send, and don’t know where your connection file
lives, there are a couple of ways to get it. If you are already running an IPython console
connected to the kernel, you can use the %connect_info
magic to display the information
necessary to connect another frontend to the kernel.
In [2]: %connect_info
"stdin_port":50255,
"ip":"127.0.0.1",
"hb_port":50256,
"key":"70be6f0f-1564-4218-8cda-31be40a4d6aa",
"shell_port":50253,
"iopub_port":50254
Paste the above JSON into a file, and connect with:
$> ipython <app> --existing <file>
or, if you are local, you can connect with just:
$> ipython <app> --existing kernel-12345.json
or even just:
$> ipython <app> --existing
if this is the most recent IPython session you have started.
Otherwise, you can find a connection file by name (and optionally profile) with
IPython.lib.kernel.find_connection_file()
:
$> python -c "from IPython.lib.kernel import find_connection_file;\
print find_connection_file('kernel-12345.json')"
/home/you/.ipython/profile_default/security/kernel-12345.json
And if you are using a particular IPython profile:
$> python -c "from IPython.lib.kernel import find_connection_file;\
print find_connection_file('kernel-12345.json', profile='foo')"
/home/you/.ipython/profile_foo/security/kernel-12345.json
You can even launch a standalone kernel, and connect and disconnect Qt Consoles
from various machines. This lets you keep the same running IPython session
on your work machine (with matplotlib plots and everything), logging in from home,
cafés, etc.:
$> ipython kernel
[IPKernelApp] To connect another client to this kernel, use:
[IPKernelApp] --existing kernel-12345.json
This is actually exactly the same as the subprocess launched by the qtconsole, so
all the information about connecting to a standalone kernel is identical to that
of connecting to the kernel attached to a running console.
Security
Warning
Since the ZMQ code currently has no encryption, listening on an
external-facing IP is dangerous. You are giving any computer that can see
you on the network the ability to connect to your kernel, and view your traffic.
Read the rest of this section before listening on external ports
or running an IPython kernel on a shared machine.
By default (for security reasons), the kernel only listens on localhost, so you
can only connect multiple frontends to the kernel from your local machine. You
can specify to listen on an external interface by specifying the ip
argument:
$> ipython qtconsole --ip=192.168.1.123
If you specify the ip as 0.0.0.0 or ‘*’, that means all interfaces, so any
computer that can see yours on the network can connect to the kernel.
Messages are not encrypted, so users with access to the ports your kernel is using will be
able to see any output of the kernel. They will NOT be able to issue shell commands as
you due to message signatures, which are enabled by default as of IPython 0.12.
Warning
If you disable message signatures, then any user with access to the ports your
kernel is listening on can issue arbitrary code as you. DO NOT disable message
signatures unless you have a lot of trust in your environment.
The one security feature IPython does provide is protection from unauthorized execution.
IPython’s messaging system will sign messages with HMAC digests using a shared-key. The key
is never sent over the network, it is only used to generate a unique hash for each message,
based on its content. When IPython receives a message, it will check that the digest
matches, and discard the message. You can use any file that only you have access to to
generate this key, but the default is just to generate a new UUID. You can generate a random
private key with:
# generate 1024b of random data, and store in a file only you can read:
# (assumes IPYTHONDIR is defined, otherwise use your IPython directory)
$> python -c "import os; print os.urandom(128).encode('base64')" > $IPYTHONDIR/sessionkey
$> chmod 600 $IPYTHONDIR/sessionkey
The contents of this file will be stored in the JSON connection file, so that file
contains everything you need to connect to and use a kernel.
To use this generated key, simply specify the Session.keyfile
configurable
in ipython_config.py
or at the command-line, as in:
# instruct IPython to sign messages with that key, instead of a new UUID
$> ipython qtconsole --Session.keyfile=$IPYTHONDIR/sessionkey
SSH Tunnels
Sometimes you want to connect to machines across the internet, or just across
a LAN that either doesn’t permit open ports or you don’t trust the other
machines on the network. To do this, you can use SSH tunnels. SSH tunnels
are a way to securely forward ports on your local machine to ports on another
machine, to which you have SSH access.
In simple cases, IPython’s tools can forward ports over ssh by simply adding the
--ssh=remote
argument to the usual --existing...
set of flags for connecting
to a running kernel, after copying the JSON connection file (or its contents) to
the second computer.
Warning
Using SSH tunnels does not increase localhost security. In fact, when
tunneling from one machine to another both machines have open
ports on localhost available for connections to the kernel.
There are two primary models for using SSH tunnels with IPython. The first
is to have the Kernel listen only on localhost, and connect to it from
another machine on the same LAN.
First, let’s start a kernel on machine worker, listening only
on loopback:
user@worker $> ipython kernel
[IPKernelApp] To connect another client to this kernel, use:
[IPKernelApp] --existing kernel-12345.json
In this case, the IP that you would connect
to would still be 127.0.0.1, but you want to specify the additional --ssh
argument
with the hostname of the kernel (in this example, it’s ‘worker’):
user@client $> ipython qtconsole --ssh=worker --existing /path/to/kernel-12345.json
Which will write a new connection file with the forwarded ports, so you can reuse them:
[IPythonQtConsoleApp] To connect another client via this tunnel, use:
[IPythonQtConsoleApp] --existing kernel-12345-ssh.json
Note again that this opens ports on the client machine that point to your kernel.
the ssh argument is simply passed to openssh, so it can be fully specified user@host:port
but it will also respect your aliases, etc. in .ssh/config
if you have any.
The second pattern is for connecting to a machine behind a firewall across the internet
(or otherwise wide network). This time, we have a machine login that you have ssh access
to, which can see kernel, but client is on another network. The important difference
now is that client can see login, but not worker. So we need to forward ports from
client to worker via login. This means that the kernel must be started listening
on external interfaces, so that its ports are visible to login
:
user@worker $> ipython kernel --ip=0.0.0.0
[IPKernelApp] To connect another client to this kernel, use:
[IPKernelApp] --existing kernel-12345.json
Which we can connect to from the client with:
user@client $> ipython qtconsole --ssh=login --ip=192.168.1.123 --existing /path/to/kernel-12345.json
The IP here is the address of worker as seen from login, and need only be specified if
the kernel used the ambiguous 0.0.0.0 (all interfaces) address. If it had used
192.168.1.123 to start with, it would not be needed.
Manual SSH tunnels
It’s possible that IPython’s ssh helper functions won’t work for you, for various
reasons. You can still connect to remote machines, as long as you set up the tunnels
yourself. The basic format of forwarding a local port to a remote one is:
[client] $> ssh <server> <localport>:<remoteip>:<remoteport> -f -N
This will forward local connections to localport on client to remoteip:remoteport
via server. Note that remoteip is interpreted relative to server, not the client.
So if you have direct ssh access to the machine to which you want to forward connections,
then the server is the remote machine, and remoteip should be server’s IP as seen from the
server itself, i.e. 127.0.0.1. Thus, to forward local port 12345 to remote port 54321 on
a machine you can see, do:
[client] $> ssh machine 12345:127.0.0.1:54321 -f -N
But if your target is actually on a LAN at 192.168.1.123, behind another machine called login,
then you would do:
[client] $> ssh login 12345:192.168.1.16:54321 -f -N
The -f -N
on the end are flags that tell ssh to run in the background,
and don’t actually run any commands beyond creating the tunnel.
See also
A short discussion of ssh tunnels: http://www.revsys.com/writings/quicktips/ssh-tunnel.html
Stopping Kernels and Consoles
Since there can be many consoles per kernel, the shutdown mechanism and dialog
are probably more complicated than you are used to. Since you don’t always want
to shutdown a kernel when you close a window, you are given the option to just
close the console window or also close the Kernel and all other windows. Note
that this only refers to all other local windows, as remote Consoles are not
allowed to shutdown the kernel, and shutdowns do not close Remote consoles (to
allow for saving, etc.).
Rules:
Restarting the kernel automatically clears all local Consoles, and prompts remote
Consoles about the reset.
Shutdown closes all local Consoles, and notifies remotes that
the Kernel has been shutdown.
Remote Consoles may not restart or shutdown the kernel.
Qt and the QtConsole
An important part of working with the QtConsole when you are writing your own
Qt code is to remember that user code (in the kernel) is not in the same
process as the frontend. This means that there is not necessarily any Qt code
running in the kernel, and under most normal circumstances there isn’t. If,
however, you specify --matplotlib qt
at the command-line, then there will be a
QCoreApplication
instance running in the kernel process along with
user-code. To get a reference to this application, do:
from PyQt4 import QtCore
app = QtCore.QCoreApplication.instance()
# app will be None if there is no such instance
A common problem listed in the PyQt4 Gotchas is the fact that Python’s garbage
collection will destroy Qt objects (Windows, etc.) once there is no longer a
Python reference to them, so you have to hold on to them. For instance, in:
def make_window():
win = QtGui.QMainWindow()
def make_and_return_window():
win = QtGui.QMainWindow()
return win
make_window()
will never draw a window, because garbage collection will
destroy it before it is drawn, whereas make_and_return_window()
lets the
caller decide when the window object should be destroyed. If, as a developer,
you know that you always want your objects to last as long as the process, you
can attach them to the QApplication instance itself:
# do this just once:
app = QtCore.QCoreApplication.instance()
app.references = set()
# then when you create Windows, add them to the set
def make_window():
win = QtGui.QMainWindow()
app.references.add(win)
Now the QApplication itself holds a reference to win
, so it will never be
garbage collected until the application itself is destroyed.
Embedding the QtConsole in a Qt application
In order to make the QtConsole available to an external Qt GUI application (just as
IPython.embed()
enables one to embed a terminal session of IPython in a
command-line application), there are a few options:
First start IPython, and then start the external Qt application from IPython,
as described above. Effectively, this embeds your application in IPython
rather than the other way round.
Use IPython.qt.console.rich_ipython_widget.RichIPythonWidget
in your
Qt application. This will embed the console widget in your GUI and start the
kernel in a separate process, so code typed into the console cannot access
objects in your application.
Start a standard IPython kernel in the process of the external Qt
application. See examples/Embedding/ipkernel_qtapp.py
for an example. Due
to IPython’s two-process model, the QtConsole itself will live in another
process with its own QApplication, and thus cannot be embedded in the main
Start a special IPython kernel, the
IPython.kernel.inprocess.ipkernel.InProcessKernel
, that allows a
QtConsole in the same process. See examples/Embedding/inprocess_qtconsole.py
for an example. While the QtConsole can now be embedded in the main GUI, one
cannot connect to the kernel from other consoles as there are no real ZMQ
sockets anymore.
Regressions
There are some features, where the qt console lags behind the Terminal
frontend:
!cmd input: Due to our use of pexpect, we cannot pass input to subprocesses
launched using the ‘!’ escape, so you should never call a command that
requires interactive input. For such cases, use the terminal IPython. This
will not be fixed, as abandoning pexpect would significantly degrade the
console experience.